European Molecular Biology Laboratory
Research Software Engineer - Spatial-omics(m/w/x)
Full-timeWith HomeofficeExperienced
Heidelberg
from 4,031.02 / month
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EUEuro-BioImaging ERIC
Data Architect / Knowledge Engineer(m/w/x)
Heidelberg
from 4,031 / month
Full-timeWith Home OfficeExperienced
AI/ML
Nejo AI Summary
Designing and setting up database and data ingestion pipelines for a European research infrastructure. MSc/PhD or equivalent experience with ontologies and knowledge graphs required. 3-year contract with family-based financial allowances.
Requirements
- Motivation and structured, hands-on approach
- Enjoyment of building reliable systems
- MSc/PhD or equivalent experience
- Relevant field degree (data/computer science, bioinformatics, information systems)
- Familiarity with metadata, ontologies, controlled vocabularies, persistent identifiers
- Advanced Python programming skills
- Experience designing/maintaining production databases
- Experience building APIs for downstream applications
- Experience with CI/CD data pipelines
- Experience with data quality practices
- Experience with version control frameworks (GitHub/GitLab)
- Effective work with multiple stakeholders
- International setting work experience
- Fluency in written and spoken English
- Experience in bioimaging or life sciences data handling
- Experience in life sciences metadata handling
- Knowledge graph experience
- Semantic web experience
- Linked data standards experience (RDF, SPARQL, SHACL)
- Hybrid retrieval approaches experience (GraphRAG)
- Experience with graph databases (Neo4J)
- Experience with research infrastructures
- Experience with FAIR data practices
- Experience managing service catalogues in scientific environments
- Hands-on experience with containerization (Docker)
- Hands-on experience with orchestration (Kubernetes)
Tasks
- Design and set up the database and data ingestion pipeline
- Maintain the AI4Access ontology-driven knowledge base
- Work with the Euro-BioImaging Bio-Hub team on ontology development
- Develop knowledge graphs with the Euro-BioImaging community
- Create technical interfaces between the knowledge base and Research Navigator
- Integrate the knowledge base with Euro-BioImaging Nodes’ systems
- Design an ontology-aligned data model
- Implement the data model’s technical representation
- Version and document the data model
- Translate service descriptions into structured form
- Collaborate with imaging specialists and Node-facing colleagues
- Support integration of semantic and metadata elements
- Work with domain experts on controlled vocabularies and identifiers
- Develop and maintain automated ETL workflows
- Handle data collection, annotations, transformations, and validation
- Ensure repeatable data updates
- Implement robust APIs for LLM applications
- Optimize APIs for querying services, capabilities, and constraints
- Ensure high reliability and transparency in API queries
- Collaborate with the Seat team on integration and testing
- Participate in release planning and technical documentation
Work Experience
- approx. 1 - 4 years
Education
- Master's degree
Languages
- English – Fluent
Tools & Technologies
- Python
- Postgres
- GitHub
- GitLab
- Docker
- Kubernetes
- Neo4J
- RDF
- SPARQL
- SHACL
Benefits
Job Security
- 3 years contract length
Family Support
- Financial allowances based on family circumstances
Find the original job posting in its most current version here. Nejo automatically captured this job from the website of Euro-BioImaging ERIC and processed the information on Nejo with the help of AI for you. Despite careful analysis, some information may be incomplete or inaccurate. Please always verify all details in the original posting! Content and copyrights of the original posting belong to the advertising company.
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EUEuro-BioImaging ERIC
Data Architect / Knowledge Engineer(m/w/x)
Heidelberg
from 4,031 / month
Full-timeWith Home OfficeExperienced
AI/ML
Nejo AI Summary
Designing and setting up database and data ingestion pipelines for a European research infrastructure. MSc/PhD or equivalent experience with ontologies and knowledge graphs required. 3-year contract with family-based financial allowances.
Requirements
- Motivation and structured, hands-on approach
- Enjoyment of building reliable systems
- MSc/PhD or equivalent experience
- Relevant field degree (data/computer science, bioinformatics, information systems)
- Familiarity with metadata, ontologies, controlled vocabularies, persistent identifiers
- Advanced Python programming skills
- Experience designing/maintaining production databases
- Experience building APIs for downstream applications
- Experience with CI/CD data pipelines
- Experience with data quality practices
- Experience with version control frameworks (GitHub/GitLab)
- Effective work with multiple stakeholders
- International setting work experience
- Fluency in written and spoken English
- Experience in bioimaging or life sciences data handling
- Experience in life sciences metadata handling
- Knowledge graph experience
- Semantic web experience
- Linked data standards experience (RDF, SPARQL, SHACL)
- Hybrid retrieval approaches experience (GraphRAG)
- Experience with graph databases (Neo4J)
- Experience with research infrastructures
- Experience with FAIR data practices
- Experience managing service catalogues in scientific environments
- Hands-on experience with containerization (Docker)
- Hands-on experience with orchestration (Kubernetes)
Tasks
- Design and set up the database and data ingestion pipeline
- Maintain the AI4Access ontology-driven knowledge base
- Work with the Euro-BioImaging Bio-Hub team on ontology development
- Develop knowledge graphs with the Euro-BioImaging community
- Create technical interfaces between the knowledge base and Research Navigator
- Integrate the knowledge base with Euro-BioImaging Nodes’ systems
- Design an ontology-aligned data model
- Implement the data model’s technical representation
- Version and document the data model
- Translate service descriptions into structured form
- Collaborate with imaging specialists and Node-facing colleagues
- Support integration of semantic and metadata elements
- Work with domain experts on controlled vocabularies and identifiers
- Develop and maintain automated ETL workflows
- Handle data collection, annotations, transformations, and validation
- Ensure repeatable data updates
- Implement robust APIs for LLM applications
- Optimize APIs for querying services, capabilities, and constraints
- Ensure high reliability and transparency in API queries
- Collaborate with the Seat team on integration and testing
- Participate in release planning and technical documentation
Work Experience
- approx. 1 - 4 years
Education
- Master's degree
Languages
- English – Fluent
Tools & Technologies
- Python
- Postgres
- GitHub
- GitLab
- Docker
- Kubernetes
- Neo4J
- RDF
- SPARQL
- SHACL
Benefits
Job Security
- 3 years contract length
Family Support
- Financial allowances based on family circumstances
Find the original job posting in its most current version here. Nejo automatically captured this job from the website of Euro-BioImaging ERIC and processed the information on Nejo with the help of AI for you. Despite careful analysis, some information may be incomplete or inaccurate. Please always verify all details in the original posting! Content and copyrights of the original posting belong to the advertising company.
About the Company
Euro-BioImaging ERIC
Industry
Science
Description
Euro-BioImaging ERIC is a European research infrastructure providing life scientists open access to advanced imaging technologies and data services.
Not a perfect match?
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