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RO
Roche
5d ago

PhD Student - Machine Learning for Biosystems Engineering(m/w/x)

Basel
Full-timeOn-siteExperienced
AI/ML

Description

You will bridge the gap between computational innovation and experimental biology by developing cutting-edge machine learning methods to solve complex challenges in organoid engineering and drug discovery.

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Requirements

  • Master’s student or recent graduate in computational biology, computer science, machine learning, bioinformatics, or related technical field
  • Proficiency in Python and modern ML frameworks
  • Knowledge of modern software engineering tools and methodologies
  • Strong fundamentals in linear algebra, statistics, and genomics ML
  • Excellent communication skills in English
  • Skill in data visualization and communicating complex findings
  • Drive to tackle biomedical problems and translate ML methods
  • Track record of relevant publications or open-source contributions
  • Experience applying ML methods to biomedical data
  • Experience in single-cell genomics data analysis and computer vision
  • Experience working with experimental collaborators

Education

Currently in higher education

Tasks

  • Lead a research project on organoid engineering
  • Develop computational methods for drug discovery
  • Apply machine learning to human biology questions
  • Analyze high-content datasets from perturbation experiments
  • Collaborate with experimental scientists to shape research
  • Create predictive ML methods for high-throughput screens
  • Integrate multimodal imaging and genomics data
  • Build foundational models for organoid phenotyping
  • Develop predictive methods for cell fate engineering
  • Discover causal mechanisms from high-content experiments
  • Implement active learning for iterative experimental design
  • Publish research findings in academic journals
  • Contribute to open-source computational tools
  • Advance next-generation human model systems

Tools & Technologies

PythonJAXPyTorchTensorFlowGitHubGitLabCI/CD

Languages

EnglishBusiness Fluent

Benefits

Diverse Work

  • Interdisciplinary work environment

Informal Culture

  • Personal expression and dialogue
  • Inclusive and respectful culture
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