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APApheris

Senior ML Researcher – Molecular Privacy(m/w/x)

Berlin
Full-timeWith Home OfficeSenior
AI/ML
Data Science

Designing privacy risk experiments for molecular and structural ML pipelines in pharmaceutical R&D. Proficiency in structure-based protein-ligand modelling and ML privacy experience required. Early-stage virtual share options, wellbeing budget, work-from-home budget.

Requirements

  • Experience with drug discovery ML models
  • Proficiency in structure-based protein-ligand modelling
  • Practical reasoning about privacy risk
  • Experience building structure-based modelling and co-folding
  • Experience with ML privacy or federated learning
  • Ability to design empirical privacy experiments
  • Clear communication of complex technical risks
  • Ownership of ambiguous cross-cutting problems
  • Published technical work in ML or biology
  • Experience in multi-organization industry collaborations
  • Experience defining privacy or risk positions
  • Experience acting as a technical authority

Tasks

  • Design and execute practical privacy risk experiments
  • Map theoretical threats to realistic attack surfaces
  • Analyze molecular and structural machine learning pipelines
  • Identify sensitive signal exposure in modeling choices
  • Build experimental tooling for privacy analysis
  • Conduct generative reconstruction and distributional leakage tests
  • Generate technically credible privacy evidence through modeling
  • Create informative reports for consortium decision-makers
  • Translate empirical findings into clear privacy narratives
  • Collaborate on grounded privacy mitigation strategies
  • Reproduce modeling pipelines for baseline attack assessments
  • Analyze active federated drug discovery programs
  • Run privacy experiments on live federated workflows
  • Synthesize quantitative evidence into stakeholder presentations
  • Act as a technical authority on privacy
  • Evaluate privacy risks under real operational conditions
  • Shape organizational standards for privacy experimentation

Work Experience

  • approx. 4 - 6 years

Education

  • Master's degree

Languages

  • EnglishBusiness Fluent

Tools & Technologies

  • Machine learning models
  • Structure-based modelling
  • Protein–ligand modelling
  • ADMET
  • Co-folding
  • Federated learning
  • Computational biology

Benefits

Competitive Pay

  • Industry-competitive compensation
  • Early-stage virtual share options

Additional Allowances

  • Wellbeing budget
  • Work-from-home budget
  • Co-working stipend

Mental Health Support

  • Mental health benefits

Learning & Development

  • Learning and development budget

Free or Subsidized Food

  • Regular team lunches

Team Events

  • Social events
  • Quarterly All Hands meet-ups

More Vacation Days

  • Generous holiday allowance
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