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EUEuropean Molecular Biology Laboratory

Research Software Engineer - Spatial-omics(m/w/x)

Heidelberg
from 4,031.02 / month
Full-timeWith Home OfficeExperienced

At biology data management tech developer, enhancing SpatialData framework for bioimaging data specifications. Knowledge of dask, xarray, zarr, or other scverse Python libraries required. Income tax-free salary, monthly family and child allowances.

Requirements

  • Master’s degree in Computer Science, Mathematics, Physics, Engineering, Life Sciences, or related field, or proven equivalent experience
  • Knowledge of Python libraries: dask, xarray, geopandas, zarr, ome-zarr, napari, AnnData, Scanpy, SpatialData, or other scverse software
  • Curiosity-driven mindset toward new methods and tech
  • Passion for open-source software and commitment to reducing adoption barriers
  • Excellent communication and organisational skills
  • Proven ability to work creatively and rigorously in a team environment
  • Fluency in English
  • Experience contributing to open-source projects, using git and familiar with GitHub workflows
  • Background in user support (software support, scientific support)
  • Bioinformatics experience in single-cell and spatial biology with a learning mindset
  • Experience in organising and delivering scientific workshops

Tasks

  • Develop software to enhance the SpatialData framework's robustness and scalability
  • Maintain the SpatialData framework, focusing on refactoring code for stability and easier maintenance
  • Contribute to the Next Generation File Format (NGFF) and OME-Zarr specifications for bioimaging data
  • Set up, test, and ensure the smooth operation of continuous integration and automation systems
  • Improve documentation, example notebooks, and training materials for the SpatialData framework

Work Experience

  • approx. 1 - 4 years

Education

  • Master's degree

Languages

  • EnglishBusiness Fluent

Tools & Technologies

  • Python
  • dask
  • xarray
  • geopandas
  • zarr
  • ome-zarr
  • napari
  • AnnData
  • Scanpy
  • SpatialData

Benefits

Additional Allowances

  • Salary free of income tax
  • Child allowances
  • Non-resident allowances
  • Education grant for private schooling
  • Financial support for travel home
  • Monthly non-resident allowance

Family Support

  • Monthly family allowances
  • 10 days child sick leave

Competitive Pay

  • Annual salary review

Retirement Plans

  • Pension scheme

Other Benefits

  • Death benefit
  • Long-term care insurance
  • Relocation package
  • On-site library

Job Security

  • Accident-at-work insurance

Flexible Working

  • Flexible working arrangements

Healthcare & Fitness

  • Private medical insurance
  • Subsidised gym

More Vacation Days

  • 30 days annual leave

Parking & Commuter Benefits

  • Free shuttle bus

Informal Culture

  • Casual dress code

Team Events

  • Sports and social club activities

Childcare

  • Kindergarten

Generous Parental Leave

  • Generous paid maternity leave
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