Bernhard-Nocht-Institut fuer Tropenmedizin Jobportal
Postdoc - clinical implementation research(m/w/x)
Full-timeOn-siteExperienced
Hamburg
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BEBernhard Nocht Institute for Tropical Medicine
PhD Student in data science(m/w/x)
Hamburg
Full-timeOn-site
AI/ML
Data Science
Nejo AI Summary
Developing transformer- and graph-based models for single-cell RNA-seq and spatial transcriptomics at tropical medicine research institute. Advanced Python or R programming expertise in Linux environments required. 30 days vacation, state-of-the-art laboratory facilities.
Requirements
- Master’s degree in Computer Science, Bioinformatics, or related fields
- Master’s degree in Biological sciences with strong programming background
- Expertise in programming, Python or R
- Expertise in Linux environments
- Interest in biological questions and disease mechanisms
- Understanding of LLMs and transformer models
- Experience with genomics, transcriptomics, or NGS (plus)
- Expertise in AI/ML (plus)
- Experience with job submission systems/HPC (plus)
- Proficiency in English (oral and written)
- Excellent organisational and independent planning skills
- Strong team spirit and communication skills
- Creative mindset and problem-solving capabilities
- Proficiency in office software (Office, Adobe)
Tasks
- Leverage large-scale single-cell RNA-seq datasets
- Utilize spatial transcriptomics datasets
- Develop transformer- and graph-based models
- Capture cellular responses across tissues
- Investigate systematic biases and biological confounders
- Develop computational strategies to correct biases
- Build predictive models for in silico perturbations
- Simulate genetic and pharmacological interventions
- Advance foundation models for host-pathogen systems
- Train, explore, and modify transformer models
- Characterize the impact of confounding variables
- Integrate multimodal host-pathogen data sources
- Establish pipelines for drug target discovery
- Apply models to immunological datasets
- Provide bioinformatics support to research groups
- Support teaching and training activities
- Contribute to independent research initiatives
Education
- Master's degree
Languages
- English – Business Fluent
Tools & Technologies
- Python
- R
- Linux
- LLMs
- transformer models
- next-generation sequencing analysis
- AI/ML
- HPC
- Office
- Adobe
Benefits
Informal Culture
- Creative, supportive, motivated team
Startup Environment
- Interdisciplinary research environment
Modern Office
- State-of-the-art facilities
Purpose-Driven Work
- Independent research project opportunities
More Vacation Days
- 30 days of vacation
Flexible Working
- Flexible and family-friendly hours
Additional Allowances
- Childcare subsidy
Public Transport Subsidies
- Deutschlandticket subsidy
Retirement Plans
- Company pension scheme
Learning & Development
- Further education and training
Find the original job posting in its most current version here. Nejo automatically captured this job from the website of Bernhard Nocht Institute for Tropical Medicine and processed the information on Nejo with the help of AI for you. Despite careful analysis, some information may be incomplete or inaccurate. Please always verify all details in the original posting! Content and copyrights of the original posting belong to the advertising company.
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BEBernhard Nocht Institute for Tropical Medicine
PhD Student in data science(m/w/x)
Hamburg
Full-timeOn-site
AI/ML
Data Science
Nejo AI Summary
Developing transformer- and graph-based models for single-cell RNA-seq and spatial transcriptomics at tropical medicine research institute. Advanced Python or R programming expertise in Linux environments required. 30 days vacation, state-of-the-art laboratory facilities.
Requirements
- Master’s degree in Computer Science, Bioinformatics, or related fields
- Master’s degree in Biological sciences with strong programming background
- Expertise in programming, Python or R
- Expertise in Linux environments
- Interest in biological questions and disease mechanisms
- Understanding of LLMs and transformer models
- Experience with genomics, transcriptomics, or NGS (plus)
- Expertise in AI/ML (plus)
- Experience with job submission systems/HPC (plus)
- Proficiency in English (oral and written)
- Excellent organisational and independent planning skills
- Strong team spirit and communication skills
- Creative mindset and problem-solving capabilities
- Proficiency in office software (Office, Adobe)
Tasks
- Leverage large-scale single-cell RNA-seq datasets
- Utilize spatial transcriptomics datasets
- Develop transformer- and graph-based models
- Capture cellular responses across tissues
- Investigate systematic biases and biological confounders
- Develop computational strategies to correct biases
- Build predictive models for in silico perturbations
- Simulate genetic and pharmacological interventions
- Advance foundation models for host-pathogen systems
- Train, explore, and modify transformer models
- Characterize the impact of confounding variables
- Integrate multimodal host-pathogen data sources
- Establish pipelines for drug target discovery
- Apply models to immunological datasets
- Provide bioinformatics support to research groups
- Support teaching and training activities
- Contribute to independent research initiatives
Education
- Master's degree
Languages
- English – Business Fluent
Tools & Technologies
- Python
- R
- Linux
- LLMs
- transformer models
- next-generation sequencing analysis
- AI/ML
- HPC
- Office
- Adobe
Benefits
Informal Culture
- Creative, supportive, motivated team
Startup Environment
- Interdisciplinary research environment
Modern Office
- State-of-the-art facilities
Purpose-Driven Work
- Independent research project opportunities
More Vacation Days
- 30 days of vacation
Flexible Working
- Flexible and family-friendly hours
Additional Allowances
- Childcare subsidy
Public Transport Subsidies
- Deutschlandticket subsidy
Retirement Plans
- Company pension scheme
Learning & Development
- Further education and training
Find the original job posting in its most current version here. Nejo automatically captured this job from the website of Bernhard Nocht Institute for Tropical Medicine and processed the information on Nejo with the help of AI for you. Despite careful analysis, some information may be incomplete or inaccurate. Please always verify all details in the original posting! Content and copyrights of the original posting belong to the advertising company.
About the Company
Bernhard Nocht Institute for Tropical Medicine
Industry
Research
Description
The Bernhard Nocht Institute for Tropical Medicine (BNITM) is the largest Research Institute for Tropical Medicine in Germany.
Not a perfect match?
- Bernhard-Nocht-Institut fuer Tropenmedizin Jobportal
Postdoc - clinical implementation research(m/w/x)
Full-timeOn-siteExperiencedHamburg - Fraunhofer Institute for Digital Medicine MEVIS
Master's thesis Data-Linkage-Systems for Integrated Health, Geospatial and Population Data(m/w/x)
Full-timeInternshipOn-siteHamburg - Evotec SE
Head of Quantitative Biomarker Sciences(m/w/x)
Full-timeOn-siteSeniorHamburg - Fraunhofer-Gesellschaft
Masterarbeit im Bereich Data-Linkage-Systems für integrierte Gesundheits-, Geo- & Bevölkerungsdaten(m/w/x)
Full-timeInternshipOn-siteHamburg - ABOUT YOU
Senior Data Analyst(m/w/x)
Full-timeOn-siteSeniorHamburg