European Molecular Biology Laboratory
Research Software Engineer - Spatial-omics(m/w/x)
Vollzeitmit HomeofficeBerufserfahren
Heidelberg
ab 4.031,02 / Monat
Neuer Job?Nejo!
Dein persönlicher KI-Karriere-Agent
EUEuro-BioImaging ERIC
Data Architect / Knowledge Engineer(m/w/x)
Heidelberg
ab 4.031 / Monat
Vollzeitmit HomeofficeBerufserfahren
AI/ML
Nejo KI-Zusammenfassung
Designing and setting up database and data ingestion pipelines for a European research infrastructure. MSc/PhD or equivalent experience with ontologies and knowledge graphs required. 3-year contract with family-based financial allowances.
Anforderungen
- Motivation and structured, hands-on approach
- Enjoyment of building reliable systems
- MSc/PhD or equivalent experience
- Relevant field degree (data/computer science, bioinformatics, information systems)
- Familiarity with metadata, ontologies, controlled vocabularies, persistent identifiers
- Advanced Python programming skills
- Experience designing/maintaining production databases
- Experience building APIs for downstream applications
- Experience with CI/CD data pipelines
- Experience with data quality practices
- Experience with version control frameworks (GitHub/GitLab)
- Effective work with multiple stakeholders
- International setting work experience
- Fluency in written and spoken English
- Experience in bioimaging or life sciences data handling
- Experience in life sciences metadata handling
- Knowledge graph experience
- Semantic web experience
- Linked data standards experience (RDF, SPARQL, SHACL)
- Hybrid retrieval approaches experience (GraphRAG)
- Experience with graph databases (Neo4J)
- Experience with research infrastructures
- Experience with FAIR data practices
- Experience managing service catalogues in scientific environments
- Hands-on experience with containerization (Docker)
- Hands-on experience with orchestration (Kubernetes)
Aufgaben
- Design and set up the database and data ingestion pipeline
- Maintain the AI4Access ontology-driven knowledge base
- Work with the Euro-BioImaging Bio-Hub team on ontology development
- Develop knowledge graphs with the Euro-BioImaging community
- Create technical interfaces between the knowledge base and Research Navigator
- Integrate the knowledge base with Euro-BioImaging Nodes’ systems
- Design an ontology-aligned data model
- Implement the data model’s technical representation
- Version and document the data model
- Translate service descriptions into structured form
- Collaborate with imaging specialists and Node-facing colleagues
- Support integration of semantic and metadata elements
- Work with domain experts on controlled vocabularies and identifiers
- Develop and maintain automated ETL workflows
- Handle data collection, annotations, transformations, and validation
- Ensure repeatable data updates
- Implement robust APIs for LLM applications
- Optimize APIs for querying services, capabilities, and constraints
- Ensure high reliability and transparency in API queries
- Collaborate with the Seat team on integration and testing
- Participate in release planning and technical documentation
Berufserfahrung
- ca. 1 - 4 Jahre
Ausbildung
- Master-Abschluss
Sprachen
- Englisch – fließend
Tools & Technologien
- Python
- Postgres
- GitHub
- GitLab
- Docker
- Kubernetes
- Neo4J
- RDF
- SPARQL
- SHACL
Benefits
Sicherer Arbeitsplatz
- 3 years contract length
Familienfreundlichkeit
- Financial allowances based on family circumstances
Die Originalanzeige dieses Stellenangebotes in der aktuellsten Version findest du hier. Nejo hat diesen Job automatisch von der Website des Unternehmens Euro-BioImaging ERIC erfasst und die Informationen auf Nejo mit Hilfe von KI für dich aufbereitet. Trotz sorgfältiger Analyse können einzelne Informationen unvollständig oder ungenau sein. Bitte prüfe immer alle Angaben in der Originalanzeige! Inhalte und Urheberrechte der Originalanzeige liegen beim ausschreibenden Unternehmen.
Noch nicht perfekt?
- Exxeta
Senior Ontology & Knowledge Graph Engineer(m/w/x)
Vollzeitmit HomeofficeSeniorBerlin, Karlsruhe, Mannheim - ABB AG
(Senior) Scientist – AI and Graphs(m/w/x)
Vollzeitmit HomeofficeBerufserfahrenMannheim - German Cancer Research Center (DKFZ)
Scientific Solution Architect(m/w/x)
Vollzeitmit HomeofficeSeniorHeidelberg - Snke
Project Engineer for Healthcare Data Modelling(m/w/x)
Vollzeitmit HomeofficeBerufserfahrenMünchen, Heidelberg
EUEuro-BioImaging ERIC
Data Architect / Knowledge Engineer(m/w/x)
Heidelberg
ab 4.031 / Monat
Vollzeitmit HomeofficeBerufserfahren
AI/ML
Nejo KI-Zusammenfassung
Designing and setting up database and data ingestion pipelines for a European research infrastructure. MSc/PhD or equivalent experience with ontologies and knowledge graphs required. 3-year contract with family-based financial allowances.
Anforderungen
- Motivation and structured, hands-on approach
- Enjoyment of building reliable systems
- MSc/PhD or equivalent experience
- Relevant field degree (data/computer science, bioinformatics, information systems)
- Familiarity with metadata, ontologies, controlled vocabularies, persistent identifiers
- Advanced Python programming skills
- Experience designing/maintaining production databases
- Experience building APIs for downstream applications
- Experience with CI/CD data pipelines
- Experience with data quality practices
- Experience with version control frameworks (GitHub/GitLab)
- Effective work with multiple stakeholders
- International setting work experience
- Fluency in written and spoken English
- Experience in bioimaging or life sciences data handling
- Experience in life sciences metadata handling
- Knowledge graph experience
- Semantic web experience
- Linked data standards experience (RDF, SPARQL, SHACL)
- Hybrid retrieval approaches experience (GraphRAG)
- Experience with graph databases (Neo4J)
- Experience with research infrastructures
- Experience with FAIR data practices
- Experience managing service catalogues in scientific environments
- Hands-on experience with containerization (Docker)
- Hands-on experience with orchestration (Kubernetes)
Aufgaben
- Design and set up the database and data ingestion pipeline
- Maintain the AI4Access ontology-driven knowledge base
- Work with the Euro-BioImaging Bio-Hub team on ontology development
- Develop knowledge graphs with the Euro-BioImaging community
- Create technical interfaces between the knowledge base and Research Navigator
- Integrate the knowledge base with Euro-BioImaging Nodes’ systems
- Design an ontology-aligned data model
- Implement the data model’s technical representation
- Version and document the data model
- Translate service descriptions into structured form
- Collaborate with imaging specialists and Node-facing colleagues
- Support integration of semantic and metadata elements
- Work with domain experts on controlled vocabularies and identifiers
- Develop and maintain automated ETL workflows
- Handle data collection, annotations, transformations, and validation
- Ensure repeatable data updates
- Implement robust APIs for LLM applications
- Optimize APIs for querying services, capabilities, and constraints
- Ensure high reliability and transparency in API queries
- Collaborate with the Seat team on integration and testing
- Participate in release planning and technical documentation
Berufserfahrung
- ca. 1 - 4 Jahre
Ausbildung
- Master-Abschluss
Sprachen
- Englisch – fließend
Tools & Technologien
- Python
- Postgres
- GitHub
- GitLab
- Docker
- Kubernetes
- Neo4J
- RDF
- SPARQL
- SHACL
Benefits
Sicherer Arbeitsplatz
- 3 years contract length
Familienfreundlichkeit
- Financial allowances based on family circumstances
Die Originalanzeige dieses Stellenangebotes in der aktuellsten Version findest du hier. Nejo hat diesen Job automatisch von der Website des Unternehmens Euro-BioImaging ERIC erfasst und die Informationen auf Nejo mit Hilfe von KI für dich aufbereitet. Trotz sorgfältiger Analyse können einzelne Informationen unvollständig oder ungenau sein. Bitte prüfe immer alle Angaben in der Originalanzeige! Inhalte und Urheberrechte der Originalanzeige liegen beim ausschreibenden Unternehmen.
Über das Unternehmen
Euro-BioImaging ERIC
Branche
Science
Beschreibung
Euro-BioImaging ERIC is a European research infrastructure providing life scientists open access to advanced imaging technologies and data services.
Noch nicht perfekt?
- European Molecular Biology Laboratory
Research Software Engineer - Spatial-omics(m/w/x)
Vollzeitmit HomeofficeBerufserfahrenHeidelbergab 4.031,02 / Monat - Exxeta
Senior Ontology & Knowledge Graph Engineer(m/w/x)
Vollzeitmit HomeofficeSeniorBerlin, Karlsruhe, Mannheim - ABB AG
(Senior) Scientist – AI and Graphs(m/w/x)
Vollzeitmit HomeofficeBerufserfahrenMannheim - German Cancer Research Center (DKFZ)
Scientific Solution Architect(m/w/x)
Vollzeitmit HomeofficeSeniorHeidelberg - Snke
Project Engineer for Healthcare Data Modelling(m/w/x)
Vollzeitmit HomeofficeBerufserfahrenMünchen, Heidelberg